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Publications and Collaborations

We provide free support and instruction on OMICS data analysis for various kinds of biomedical research projects. By request, we provide letters of support for grants and also collaborate on analyzing the data. See examples of our recent collaborations below. 

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Publications

  • Ahsan MK, Figueroa-Hall L, Baratta V, Garcia-Milian R, Lam TT, Hoque K, Salas PJ, Ameen NA. Glucocorticoids and serum- and glucocorticoid-inducible kinase 1 are potent regulators of CFTR in the native intestine: implications for stress-induced diarrhea. Am J Physiol Gastrointest Liver Physiol. 2020 Aug 1;319(2):G121-G132. doi: 10.1152/ajpgi.00076.2020. Epub 2020 Jun 22. PMID: 32567324; PMCID: PMC7500270
  • Burman, A., Garcia-Milian, R., & Whirledge, S. (2020). Gene X environment: the cellular environment governs the transcriptional response to environmental chemicals. Human genomics, 14(1), 19. https://doi.org/10.1186/s40246-020-00269-1
  • Kandel-Kfir, M., Garcia-Milian, R., Gueta, I., Lubitz, I., Ben-Zvi, I., Shaish, A., Shir, L., Harats, D., Mahajan, M., Canaan, A., & Kamari, Y. (2020). IFNγ potentiates TNFα/TNFR1 signaling to induce FAT10 expression in macrophages. Molecular immunology, 117, 101–109. https://doi.org/10.1016/j.molimm.2019.11.004
  • Luo, X., Guo, X., Tan, Y., Zhang, Y., Garcia-Milian, R., Wang, Z., Shi, J., Yu, T., Ji, J., Wang, X., Xu, J., Zhang, H., Zuo, L., Lu, L., Wang, K., & Li, C. R. (2020). KTN1 variants and risk for attention deficit hyperactivity disorder. American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics, 183(4), 234–244. https://doi.org/10.1002/ajmg.b.32782
  • Sun, Y., Mironova, V., Chen, Y., Lundh, E., Zhang, Q., Cai, Y., Vasiliou, V., Zhang, Y., Garcia-Milian, R., Khan, S. A., & Johnson, C. H. (2020). Molecular Pathway Analysis Indicates a Distinct Metabolic Phenotype in Women With Right-Sided Colon Cancer. Translational oncology, 13(1), 42–56. https://doi.org/10.1016/j.tranon.2019.09.004
  • Sahraei, M., Chaube, B., Liu, Y., Sun, J., Kaplan, A., Price, N. L., Ding, W., Oyaghire, S., García-Milian, R., Mehta, S., Reshetnyak, Y. K., Bahal, R., Fiorina, P., Glazer, P. M., Rimm, D. L., Fernández-Hernando, C., & Suárez, Y. (2019). Suppressing miR-21 activity in tumor-associated macrophages promotes an antitumor immune response. The Journal of clinical investigation, 129(12), 5518–5536. https://doi.org/10.1172/JCI127125
  • Chen, Y., Manna, S. K., Golla, S., Krausz, K. W., Cai, Y., Garcia-Milian, R., Chakraborty, T., Chakraborty, J., Chatterjee, R., Thompson, D. C., Gonzalez, F. J., & Vasiliou, V. (2019). Glutathione deficiency-elicited reprogramming of hepatic metabolism protects against alcohol-induced steatosis. Free radical biology & medicine, 143, 127–139. https://doi.org/10.1016/j.freeradbiomed.2019.07.025
  • Landau, S. I., Guo, X., Velazquez, H., Torres, R., Olson, E., Garcia-Milian, R., Moeckel, G. W., Desir, G. V., & Safirstein, R. (2019). Regulated necrosis and failed repair in cisplatin-induced chronic kidney disease. Kidney international, 95(4), 797–814. https://doi.org/10.1016/j.kint.2018.11.042
  • Charkoftaki G, Thompson DC, Golla JP, Garcia-Milian R, Lam TT, Engel J, Vasiliou V. Integrated multi-omics approach reveals a role of ALDH1A1 in lipid metabolism in human colon cancer cells.Chem Biol Interact. 2019 Mar 6. pii: S0009-2797(18)31314-0. doi: 10.1016/j.cbi.2019.02.030 https://www.ncbi.nlm.nih.gov/pubmed/30851239  
  • Chen Y, Golla S, Garcia-Milian R, Thompson D, Gonzalez FJ, Vasiliou V. Hepatic metabolic adaptation in a murine model of glutathione deficiency. Chemo-Biological Interactions (2019) https://doi.org/10.1016/j.cbi.2019.02.015
  • Mis M, Yang Y, Tanaka B, Gomis-Perez C, Liu S, Dib-Hajj F, Adi T, Garcia-Milian R, Schulman B, Dib-Hajj D, Waxman S. Resilience to Pain: A Peripheral Component Identified using induced Pluripotent Stem Cells. The Journal of Neuroscience. (2018) doi: 10.1523/JNEUROSCI.2433-18. https://www.ncbi.nlm.nih.gov/pubmed/30459225
  • Perkins AN, Inayat-Hussain SH, Deziel NC, Johnson CH, Ferguson SS, Boyles AL, Garcia-Milian R, Thompson DC, Vasiliou V. Evaluation of Potential Carcinogenicity of Organic Chemicals in Synthetic Turf Crumb Rubber Environmental Research, Elsevier, October 2018 https://doi.org/10.1016/j.envres.2018.10.018 https://www.ncbi.nlm.nih.gov/pubmed/30458352
  • Inayat-Hussain S, Aziz AM, Fukumura M, Chai MJ, Deziel N, Garcia-Milian R, Vasiliou V, Low WJ. Prioritization of Reproductive Toxicants in Unconventional Oil and Gas Operations Using a Multi-Country Regulatory Data-Driven Hazard Assessment. Environment International 117:348-358, 2018 doi: 10.1016/j.envint.2018.05.010 https://www.ncbi.nlm.nih.gov/pubmed/29793188  
  • Garcia-Milian R, Hersey D, Vukmirovic M, Duprilot F. (2018) Data challenges of biomedical researchers in the age of omics. PeerJ 6:e5553  https://www.ncbi.nlm.nih.gov/pubmed/30221093
  • Pelekanou V, Anastasiou E, Bakogeorgou E, Notas G, Kampa M, Garcia-Milian R, Lavredaki K, Moustou E. Estrogen receptor-alpha isoforms are the main estrogen receptors expressed in Non-Small Cell Lung Carcinoma. Steroids (Elsevier) 2018 pii: S0039-128X(18)30016-3. doi: 10.1016/j.steroids.2018.01.008 https://www.ncbi.nlm.nih.gov/pubmed/29454903
  • Guo X, Qiu W, Garcia-Milian R, Lin X,  Zhang Y, Cao Y, Tan Y, Wang Z, Shi J, Wang J,  Liu D, Song L, Xu Y, Wang X, Liu Na, Sun T, Zheng J, Luo J, Zhang H, Xu J, Kang L, Ma C, Wang K, Luo X. Genome-wide significant, replicated and functional risk variants for Alzheimer’s disease Journal of Neural Transmission p1-17, 2017  https://doi.org/10.1007/s00702-017-1773-0 https://www.ncbi.nlm.nih.gov/pubmed/28770390
  • Zuo L, Garcia-Milian R, Guo X, Zhong C, Tan Y, Wang Z, Wang J, Chiang-Shan Li, Luo X. Replicable risk nicotinic cholinergic receptor genes for nicotine dependence. Genes 7(11), 95 doi:10.3390/genes7110095, 2016 http://www.mdpi.com/2073-4425/7/11/95 https://www.ncbi.nlm.nih.gov/pubmed/27827986